YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119850777, gi...
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILADFGAEV VLVDRLGSVN HPSHLARGKR SLALDLKRSP GAAVLRRMCA RADVLLEPFR  60
   61 CGVMEKLQLG PETLQQDNPK LIYARLSGFG QSGIFSKVAG HDINYVALSG VLSKIGRSGE 120
  121 NPYPPLNLLA DFGGGGLMCT LGILLALFER TRSGLGQVID ANMVEGTAYL STFLWKTQAM 180
  181 GLWAQPRGQN LLDGGAPFYT TYKTADGEFM AVGAIEPQFY TLLLKGLGLE SEELPSQMSI 240
  241 EDWPEVKKKF ADVFARKTKA EWCQIFDGTD ACVTPVLTLE EALHHQHNRE RGSFITDEEQ 300
  301 HASPRPAPQL SRTPAVPSAK RDPSVGEHTV EVLKDYGFSQ EEIHQLHSDR IIESNKLKAN 360
  361 L

Type	Start	End	Confidence
Cytoplasmic	1	125	0.53
Transmembrane Helix	126	148	0.62
Non-Cytoplasmic	149	361	0.77