YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62202615, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDWKTFQALL SGVNKYSTAF GRIWLSVVFV FRVMVYVVAA ERVWGDEQKD FDCNTKQPGC  60
   61 ANVCYDFYFP ISHIRLWALQ LILVTCPSLM VVMHVKYREE RERKAKAKLY DNTGKKHGGL 120
  121 WWTYLISLFA KTGIEITFLY ILHHIYDSFY LPRLVKCDVQ PCPNVVDCYI GRPTEKRVFT 180
  181 YFMVGASALC IVLSVCEIIY LIAKRISRCA NKYKRHDKRS TPINQRYRDE DSNCTIPLHE 240
  241 LESKPEYKPE TKEDFRSEYK PGPKPQFKSE VKPTFKPAYR LSVDMRASAP NLSAPMYKIQ 300
  301 SGII

Type	Start	End	Confidence
Cytoplasmic	1	19	0.93
Transmembrane Helix	20	40	0.91
Non-Cytoplasmic	41	75	0.97
Transmembrane Helix	76	97	0.94
Cytoplasmic	98	117	0.98
Transmembrane Helix	118	142	0.88
Non-Cytoplasmic	143	178	0.96
Transmembrane Helix	179	202	0.90
Cytoplasmic	203	304	0.98