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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: COL12_RAT
Protein type: Transmembrane
Type Confidence: 0.91
Topology Confidence: 0.83
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKDDFAEEEE VQSFGYKRFG IQEGTQCTKC KNNWALKFSI ILLYVLCALL TITVAILGYK  60
   61 VVEKMDTVTD GMETSRQTYD NKLIAVESDL KKLGDQTGKK ALSTNSELST FRSDILDLRQ 120
  121 QLQEITEKTS KNKDMLEKLQ ANGDSLVDRQ SQLKETLQNN SFLITTVNKT LQAYNGYVTN 180
  181 LQQDTSVLQG NLQSQMYSQN VVIMNLNNLN LTQVQQRNLI TNLQRSVDDT SLAIQQIKND 240
  241 FQNLQQVFLQ AKKDTDWLKE KVQSLQTLAA NNSALAKANN DTLEDMNNQL SSFTGQMDNI 300
  301 TTISQANEQS MKDLQDLHKD TENRTAVKFS QLEERFQVFE TDIVNIINNI SYTAHHLRTL 360
  361 TSNLNDVRTT CTDTLTRHTD DLTSLNNTLV NIRLDSISLR MQQDMMRSRL DTEVANLSVV 420
  421 MEEMKLVDSK HGQLIKNFTI LQGPPGPRGP KGDRGSQGPP GPTGNKGQKG EKGEPGPPGP 480
  481 AGERGTIGPV GPPGERGSKG SKGSQGPKGS RGSPGKPGPQ GPSGDPGPPG PPGKDGLPGP 540
  541 QGPPGFQGLQ GTVGEPGVPG PRGLPGLPGV PGMPGPKGPP GPPGPSGAME PLALQNEPTP 600
  601 ASEVNGCPPH WKNFTDKCYY FSVEKEIFED AKLFCEDKSS HLVFINSREE QQWIKKQTMG 660
  661 RESHWIGLTD SEQESEWKWL DGTPVDYKNW KAGQPDNWGS GHGPGEDCAG LIYAGQWNDF 720
  721 QCDEINNFIC EKEREAVPSS IL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle