YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71043888, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	97	0.98
Transmembrane Helix	98	119	0.92
Non-Cytoplasmic	120	185	0.95
Transmembrane Helix	186	207	0.91
Cytoplasmic	208	228	0.86
Transmembrane Helix	229	250	0.85
Non-Cytoplasmic	251	285	0.58
Transmembrane Helix	286	310	0.81
Cytoplasmic	311	320	0.56
Transmembrane Helix	321	339	0.60
Non-Cytoplasmic	340	359	0.87
Transmembrane Helix	360	380	0.91
Cytoplasmic	381	395	0.83
Transmembrane Helix	396	416	0.89
Non-Cytoplasmic	417	470	0.93
Transmembrane Helix	471	491	0.91
Cytoplasmic	492	498	0.74
Transmembrane Helix	499	521	0.85
Non-Cytoplasmic	522	546	0.79
Transmembrane Helix	547	581	0.61
Cytoplasmic	582	791	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAASDPYLP YDGGGDCIPL RELHKRGTHY TMTNGGSINS STHLLDLLDE PIPGVGTYDD  60
   61 FHTIDWVREK CKDRERHRRI NSKKKESAWE MTKSLYDAWS GWLVVTLTGL ASGALAGLID 120
  121 IAADWMTDLK EGICLSALWY NHEQCCWGSN ETTFEERDKC PQWKTWAELI IGQAEGPGSY 180
  181 IMNYIMYIFW ALGFAFLAVS LVKVFAPYAC GSGIPEIKTI LSGFIIRGYL GKWTLMIKTI 240
  241 TLVLAVASGL SLGKEGPLVH VACCCGNIFS YLFPKYSTNE AKKREVLSAA SAAGVSVAFG 300
  301 APIGGVLFSL EEVSYYFPLK TLWRSFFAAL VAAFVLRSIN PFGNSRLVLF YVEYHTPWYL 360
  361 FELFPFILLG VFGGLWGAFF IRANIAWCRR RKSTRFGKYP VLEVIVVAAI TAVIAFPNPY 420
  421 TRLNTSELIK ELFTDCGPLE SSSLCDYRND MNASKIVDDI PDRPAGLGVY SAIWQLCLAL 480
  481 IFKIIMTVFT FGIKVPSGLF IPSMAIGAIA GRIVGIAVEQ LAYYHHDWFI FKEWCEVGAD 540
  541 CITPGLYAMV GAAACLGGVT RMTVSLVVIV FELTGGLEYI VPLMAAVMTS KWVGDAFGRE 600
  601 GIYEAHIRLN GYPFLDAKEE FTHTTLAADV MRPRRNDPPL AVLTQDNMTV DDIENMINET 660
  661 SYNGFPVIMS KESQRLVGFA LRRDLTIAIE SARKKQEGIV GSSRVCFAQH TPSLPAESPR 720
  721 PLKLRSILDM SPFTVTDHTP MEIVVDIFRK LGLRQCLVTH NGRLLGIITK KDILRHMAQT 780
  781 ANQDPASIMF N