YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61402535
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGLSRTQSVI MLVGLVKLDL ASVGLTLFLG LIFLVLFEIF RIHSYKGRFP PGPTALPFVG  60
   61 NLPHFLKSPM EFIRSMPQYG EMTTIFFGRK PVIMLNTIQL AKEAYVQDVF SGRPAIPLFD 120
  121 WITNGLGIVM VTFNNSWRQQ RRFALHTLRN FGLGKKTVED RVLEESRHLI AEMLKEEGKS 180
  181 MNPQHALQNA ISNIICSIVF GDRFEYDNKR FEYLLKTLNE NIMLAGSAAG QIFNLVPFIK 240
  241 HFPGPHQKIK QNADELLGFI RDEAKEHKQT LDPDSPRDFI DAYLLEIEKQ KSSKDSTFHE 300
  301 ENLVVSASDL FLAGTDTTET TIRWGLINLI QNPDVQERCH EEIVRVLGYD RLPSMDDRDK 360
  361 LPYTLATVYE IQRCANIAPN VMHQTILPTR LHGYDIPQGT IILTNLAAIF SNKDHWKHPD 420
  421 AFNPENFLDE NGHFSKPESF IPFSLGPRVC LGETLARTEL FLFITALLQR IRFSWPPDAK 480
  481 PIDMDGIMGL VRSPQTFNVV CHSRDNVK

Type	Start	End	Confidence
Cytoplasmic	1	17	0.56
Transmembrane Helix	18	40	0.87
Non-Cytoplasmic	41	508	0.73