YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|67462122
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.90
Transmembrane Helix	37	52	0.56
Non-Cytoplasmic	53	63	0.47
Transmembrane Helix	64	98	0.67
Cytoplasmic	99	99	0.19
Transmembrane Helix	100	128	0.57
Non-Cytoplasmic	129	194	0.54
Transmembrane Helix	195	216	0.89
Cytoplasmic	217	228	0.41
Transmembrane Helix	229	252	0.80
Non-Cytoplasmic	253	275	0.56
Transmembrane Helix	276	295	0.88
Cytoplasmic	296	304	0.47
Transmembrane Helix	305	323	0.61
Non-Cytoplasmic	324	338	0.76
Transmembrane Helix	339	359	0.92
Cytoplasmic	360	375	0.79
Transmembrane Helix	376	399	0.85
Non-Cytoplasmic	400	412	0.59
Transmembrane Helix	413	441	0.73
Cytoplasmic	442	462	0.54
Transmembrane Helix	463	483	0.55
Non-Cytoplasmic	484	484	0.32
Transmembrane Helix	485	504	0.80
Cytoplasmic	505	762	0.66

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYKKMSLRQL FSDRPPLNAV LQEKAQKLRY ACSPSKCIHS LLSFLPIITW LPKYDWSHSF  60
   61 FGDLSGGLTM AVFSVPQGIA LASITGVPPV YGLYTAIFPS FLYIFFGTSK HNALGGFAVL 120
  121 SLMTHGAIEK VMLRTATSYN ATAYVNHTLD ELLDKENETA LISNTTLMQI LGNETSFVEE 180
  181 VTMEMWTEGV TPVKQIHVAT TIIFLAGVIQ VFMGVFRLQY LTSLFSEQVM SGFVVGGGIH 240
  241 VFFAQIGNML GIELPRRSGP GYLYYRIWDL VENLDNVHIP TVCISLSSFL FLVFGKEYLA 300
  301 PWLNSAFNYP VPFELVLLTH YLINRFPPPS LPRFDLIRHI GLNAAAIAIT AVAIHITVAK 360
  361 VVEKRYKYKI NHGQELYALG FVGVLSSFFP VFPVTSGFAR SVVGAAVGGS TQLTCLFSSL 420
  421 ALLSVILCIG PALEYLPQCI LSAMIIFAQK GMLEKFGELK SLWPVFKIDF TIWLMSFFLT 480
  481 VCYDMGEGLL MAIGFAVLTT IIRTQRPKWH FLSRDDDTEN YKETKKRDLE RIQGNVCIFR 540
  541 MDAPLIFTSS DRFTMSVWQC VKKWERCKSE SFVTIEQMNS DRSADIFDSK LKSARRRWKR 600
  601 DQKSENRCKL VIDCDGFPYV DYLGLSTLKS VYVDLQAAGI QCFFVVQKSD LKKLFRATDF 660
  661 YEVVDESKVF NKVGDAVKAA EQHISSPKTT KEILTALASI ATTDTVLIDE ESSDSNDNDD 720
  721 AEIQERITEE SENSEEVMSE TSVSIEDATS LTSSRNSINS EE