YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|159569951, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.79
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.89
Transmembrane Helix	38	57	0.79
Non-Cytoplasmic	58	68	0.73
Transmembrane Helix	69	92	0.82
Cytoplasmic	93	117	0.65
Transmembrane Helix	118	139	0.92
Non-Cytoplasmic	140	216	0.97
Transmembrane Helix	217	237	0.93
Cytoplasmic	238	245	0.83
Transmembrane Helix	246	268	0.88
Non-Cytoplasmic	269	296	0.91
Transmembrane Helix	297	317	0.90
Cytoplasmic	318	329	0.83
Transmembrane Helix	330	353	0.84
Non-Cytoplasmic	354	386	0.87
Transmembrane Helix	387	408	0.84
Cytoplasmic	409	428	0.88
Transmembrane Helix	429	453	0.87
Non-Cytoplasmic	454	461	0.84
Transmembrane Helix	462	484	0.95
Cytoplasmic	485	504	0.96
Transmembrane Helix	505	524	0.97
Non-Cytoplasmic	525	538	0.82
Transmembrane Helix	539	561	0.90
Cytoplasmic	562	653	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSESNTTAAV MADQNGAVPG EPVKRDENSR RGNWGNQIEF VLTSVGYAVG LGNVWRFPYL  60
   61 CYRNGGGAFM FPYFIMLVFC GIPLFFLELS FGQFTSLGCL GVWKVSPMFK GVGYGMMVVS 120
  121 TYIGIYYNVV ICIAFYYFFM SMTNLLPWTY CNNPWNTPDC SGVVSTHRAN ATFANMSAVV 180
  181 SGVTEIVNRT KRTSPSEEYW RNYVLNISDG IGNFGEVRLP ILGCLAVSWF VVFLCLIRGV 240
  241 KSSGKVVYFT ATFPYVVLTI LFIRGITLDG AISGIKYYLT PQWQKILDAK VWGDAASQIF 300
  301 YSLGCAWGGL ITMASYNKFH NNCFRDSIII SVTNCGTSVY AGFVIFSILG FMAHHLGVDV 360
  361 SEVADHGPGL AFVAYPEALT LLPISPLWSL LFFFMLILLG LGTQFCLLET LVTAVVDEIG 420
  421 TDWIIKNKTY VTLGVAIIGF LLGVPLTTQA GIYWLLLMDN YAASFSLVII SCIMCICIMY 480
  481 VYGHKNYFKD VEMMLGFPPP IFFRICWRYV SPFIITFILI FTVIQYKPIT YNDYVYPGWS 540
  541 LVIGFAMALS SVICIPIYAL FKIAMSEGST FLERLKNSVK PDPDWGPALQ EHRKGRYATA 600
  601 GPESVEVSPL KEDLKDEGKD KLTEKEKETE KKDEIGLTIP GSNGSTLNPT PSA