YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|55962295, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNWGFLENVL SGVNRYSTVV GRVWLSILFI FRILVFVAAA EQVWKDEFKD FVCNTQQPGC  60
   61 EQVCFDHFFP ISQVRLWALQ LIMVSTPSLL VALHVAYREH RERKHKRRLY QDKGSIDGGL 120
  121 LFTYITSLVL KTSFEVGTLL AFYLLYSGFH VPRLLRCAES PCPNSVDCYI ARATEKKIFL 180
  181 YIMGCTSILC IALNLLEMGY IVSKQCWKSF SKRYTPVRDG ATRPPSTFTL GPPQPSCTAK 240
  241 EEGDQSAPAG QETA

Type	Start	End	Confidence
Cytoplasmic	1	19	0.94
Transmembrane Helix	20	40	0.92
Non-Cytoplasmic	41	75	0.97
Transmembrane Helix	76	97	0.95
Cytoplasmic	98	117	0.93
Transmembrane Helix	118	142	0.56
Non-Cytoplasmic	143	177	0.55
Transmembrane Helix	178	202	0.85
Cytoplasmic	203	254	0.58