YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|63101139, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVTTTTED VFDDSYVEKP GPSPPVQIVW RNVILMTLLH LGALYGMTIL PFVSSLTLIW  60
   61 TGVCFMVSAL GITAGAHRLW SHRSYRASLP LRIFLAVANS MAFQNDIYEW ARDHRVHHKF 120
  121 SETDADPHNA RRGFFFAHIG WLLVRKHPEV IDKGRKLTFE DLKADSVVMF QRRHYKLSVV 180
  181 VMCFLIPTLV PWFFWEESLW TAYLVPCLLR YAVVLNATWL VNSAAHMWGM RPYDHNINPR 240
  241 ENKFVAFSAI GEGFHNYHHT FPHDYATSEF GSRLNVTKAF IDLMCFLGLA NDCRRVTHET 300
  301 ILARVQRTGD GSHKSG

Type	Start	End	Confidence
Cytoplasmic	1	27	0.98
Transmembrane Helix	28	49	0.89
Non-Cytoplasmic	50	56	0.74
Transmembrane Helix	57	80	0.89
Cytoplasmic	81	174	0.97
Transmembrane Helix	175	195	0.92
Non-Cytoplasmic	196	201	0.82
Transmembrane Helix	202	221	0.89
Cytoplasmic	222	316	0.94