YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68163443, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.84
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISSSLLFL SHLIVLTYGH PVLKTPERVT GTWKGDVKIQ CIYNPLTGYR EVLVKWLVQR  60
   61 GSDHVTIFLR DYSGDHVQQA KYRGRLKVSH KVPGDVSLQL NNLQMDDRNH YTCEVTWQTP 120
  121 DGDQVRRDKI TELRVQKYPY KPPKITTEAL TTMQSSLEAT TITSSTSDWT TSVTQTPQGT 180
  181 TTVPGGKLPI FAIILIICFC CIVVVTIAFI MFRRRTFQEY VYEVSRMYAR QTSNSEETTR 240
  241 VTTIASAYFN NEPDSQALIN DYSDDPCLSQ EYQITTRSTM TIPAC

Type	Start	End	Confidence
Signal Peptide	1	19	0.84
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	189	0.93
Transmembrane Helix	190	210	0.96
Cytoplasmic	211	285	0.93