YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|86571960, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPADVTQSA MPLVSADMSL IGLFWQAHWI VKSVMLGLIG CSVWVWAIAI DKLILYSRTK  60
   61 RAMDRFEQAF WSGESIDDLY RTLSAKPTHS MAACFVAAMR EWKRSFESHS RSFAGLQMRI 120
  121 EKVMNVSIAR EVERLERRLL VLATVGSAGP FVGLFGTVWG IMSSFQSIAA SKNTSLAVVA 180
  181 PGIAEALFAT AIGLIAAIPA TIFYNKFTSE VNRQTQRLEG FADEFSAILS RQIDERA

Type	Start	End	Confidence
Cytoplasmic	1	8	0.49
Transmembrane Helix	9	29	0.51
Non-Cytoplasmic	30	33	0.56
Transmembrane Helix	34	55	0.87
Cytoplasmic	56	138	0.98
Transmembrane Helix	139	161	0.94
Non-Cytoplasmic	162	182	0.87
Transmembrane Helix	183	204	0.89
Cytoplasmic	205	237	0.96