YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77993338, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADWSLLGSF LEEVQEHSTS VGKVWLTILF IFRILVLGTA AESSWGDEQE DFTCDTEQPG  60
   61 CENVCYDRAF PIAHIRFWVL QIVFVSTPSL IYMGHAMHIV RREEKKRKEL DDEGAQRDGE 120
  121 KYPEDDKNKE DEGGGRRVRL KGALLQTYVL SILIRTVMEV IFIIIQYLIY GVFLSALYVC 180
  181 KAPPCPHPVN CYISRPTEKN VFIVFMLAVA AVSLLLSIVE LYHLAWKQLR KYVHGYKASK 240
  241 QRPNTPSTMP ALSPNPSTPN RACTPPPDFN QCLTSPPSSP TLQTHSLLHP TCPPFHDRLA 300
  301 HQQNSANMVT ERHRGQDYLG VNFLSFSQTP TETPNSCASP SFLSSDFEDK RRFSKSSGTS 360
  361 SRMRPDDLAV

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	41	0.90
Non-Cytoplasmic	42	76	0.95
Transmembrane Helix	77	99	0.90
Cytoplasmic	100	146	0.96
Transmembrane Helix	147	169	0.82
Non-Cytoplasmic	170	201	0.88
Transmembrane Helix	202	224	0.92
Cytoplasmic	225	370	0.97