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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|57230943, gi|...
Protein type: Globular with Signal Peptide
Type Confidence: 0.95
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMMMAGAGSW LYLTAGLLVV ALPQLSHSCP SRCLCFRTTV RCMHLMLESV PAVPPHTTIL  60
   61 DLRFNRIKDI QTGAFKHLKN LNTLLLNNNQ IKRIPSEAFK DLENLKYLYL YKNEIQSIDR 120
  121 QAFKGLASLE QLYLHFNQIE TLEPESFNYL PKLERLFLHN NRITHLVPGT FSQLESMKRL 180
  181 RLDSNALHCD CEILWLADLL KIYSESGNAQ AAATCEYPRR LQGRSVSTIT PSELNCERPR 240
  241 ITSEPQDVDV TFGNTVYFTC RAEGNPKPEI IWLRNNNELS MKDDSRLNLL NDGTLMIQNT 300
  301 KETDQGIYQC MAKNVAGEVK THEVTLRYYG TPATPTFVIQ PQNTEVLVGE SVTLECSATG 360
  361 QPHPRVTWTR GDRTPLPSDP RINITPSGGL YIQNVNQDDA GEYTCFATNS VETIHSTAYI 420
  421 IVQAVPQFTV VPQDRNVFEG HTVDFHCEAQ GNPKPVIAWT KGGNQLSVDR RHQVLSSGTL 480
  481 RILRVALHDQ GQYECQAVNI VGSKSTAAQL IVQTRVTPVF ATVPNDMTVE VGTDVQIPCS 540
  541 SQGDPLPIIT WNKDGIQVTE SGKFHISPHG YLAIRDAGLA DQGRYECVAR NPIGYSSVSM 600
  601 VLSVLVPEVS RTGDPFVATS IIEAIATVDR AINSTRTHLF DSRPRSPGDL LALFRYPRDP 660
  661 YTVEQARAAE IFERTLQLIQ DHVQSGLMVD LNGTSYHYND LVSPQYLNMI ANLSGCATHR 720
  721 RINNCSNMCF HQKYRTHDGT CNNLQHPMWG ASLTAFERLL KSVYENGFNL PRGISGRIYN 780
  781 GFPLPLPRLV STTLIGTHTI TPDEQFTHML MQWGQFLDHD LDSTVVALSQ ARFSDGQDCS 840
  841 VVCTNDAPCF PIMVPPNDPR VRNNARCMSM VRSSPVCGSG MTSLLMNSVY PREQMNQLTS 900
  901 YIDASNVYGS SDHESNEIRD SASHRGLLKQ GIVQRSGKPL LPFATGPPTE CMRDENESPI 960
  961 PCFLAGDHRA NEQLGLTSMH TLWFREHNRI ATELLRLNPH WDGDTIYHET RKIVGAQMQH1020
 1021 ITYSHWLPKI FGDVGMKMLG EYKSYDPNVN AGILNEFATA AFRFGHTLIN PILYRLDEKF1080
 1081 EPIPQGHVPL HRAFFSPFRI VNEGGIDPLL RGLIGVAAKM RVTSQLLNTE LTEKLFSMAH1140
 1141 AVALDLAALN VQRGRDHGIP PYHDFRVFCN LSTVQTFDDL RNEIKNPDVR EKLKRLYGSP1200
 1201 LNIDLFPALM VEDLIPGSRL GPTLMCLLTT QFRNIRDGDR FWYENPGVFT AAQLTQIKQT1260
 1261 SLARVLCDNG DNITKVQHDL FRVAEFPHGY VSCKNIAKMD LRVWQDCCED CRTRGQFSTF1320
 1321 SNHFRGKRST EHSYKEDNKE PSSLLNQSVN TTCNTEQPKN LPHVNDFKEF VLDMQKTITG1380
 1381 LRKQIKKLES RLSNTDCTDE TGESHSTKEK WNKDACTKCE CYNGHITCFV KSCPPVNCSR1440
 1441 PQRIEGVCCP VCTDDKIQST 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle