YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPN4_BRABE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEIPSFQPP INATEVEEEN AVFPTALTEW FSEVGNQVGE VALKLLSGEG DGMEVTPTPG  60
   61 CTGNGSVCNG TDSGGVVWDI PPLAHYIVGT AVFCIGCCGM FGNAVVVYSF IKSKGLRTPA 120
  121 NFFIINLALS DFLMNLTNMP IFAVNSAFQR WLLSDFACEL YGFAGGLFGC LSINTLMAIS 180
  181 MDRYLVITKP FLVMRIVTKQ RVMFAILLLW IWSLVWALPP LFGWSAYVSE GFGTSCTFDY 240
  241 MTPKLSYHIF TYIIFFTMYF IPGGVMIYCY YNIFATVKSG DKQFGKAVKE MAHEDVKNKA 300
  301 QQERQRKNEI KTAKIAFIVI SLFMSAWTPY AVVSALGTLG YQDLVTPYLQ SIPAMFAKSS 360
  361 AVYSPIVYAI TYPKFREAVK KHIPCLSGCL PASEEETKTK TRGQSSASAS MSMTQTTAPV 420
  421 HDPQASVDSG SSVSVDDSSG VSRQDTMMVK VEVDKRMEKA GGGAADAAPQ EGASVSTVSA 480
  481 QIEVRPSGKV TTKADVISTP QTAHGLSASP VPKVAELGSS ATLESAAIPG KIPTPLPSQP 540
  541 IAAPIERHMA AMADEPPPKP RGVATTVNVR RTESGYDRSQ DSQRKKVVGD THRSRSFNTT 600
  601 KDHFASEQPA ALIQPKELYS DDTTKKMARQ SSEKHEYDNP AFDEGITEVD TDSENETEGS 660
  661 YDMLSVRFQA MAEEPPVETY RKASDLAINL GKASLMLSEA HDETVL

Type	Start	End	Confidence
Non-Cytoplasmic	1	83	0.95
Transmembrane Helix	84	108	0.89
Cytoplasmic	109	121	0.80
Transmembrane Helix	122	143	0.89
Non-Cytoplasmic	144	159	0.88
Transmembrane Helix	160	181	0.90
Cytoplasmic	182	201	0.87
Transmembrane Helix	202	223	0.90
Non-Cytoplasmic	224	248	0.92
Transmembrane Helix	249	271	0.92
Cytoplasmic	272	314	0.94
Transmembrane Helix	315	333	0.94
Non-Cytoplasmic	334	706	0.54