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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|56805553
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKKFNYKLP SMVAVTLLGT AFTAHHADAA ETAQDQTKNK NVLDDQATLK QANNAKQEVS  60
   61 NPTQNISGTQ TYQDPTKVKP VKTTSTENND ASINQQKTEN ASTNENTNVK AQTTDASNQN 120
  121 NNQIDENSTS AETQKQEESN KDLENNENQS LQQDSTKENN QEVAQQNARQ NASTTQEKAT 180
  181 ETTTQNQSQE QAQTTSQSAK QAVKDNGGYS LDDDEDDVDD ESNSVDASQK TQATQQSKEN 240
  241 VATSTDTKTQ SATPKANELK ANNVSNESAK VSSTQSNDNA TKENAKQVTT FNSVAKPRMM 300
  301 YATANRATSS LPKYQPQVKS SINDYIRKKN FKAPQIEEDY SSYFPKYGYR NGVGRPEGIV 360
  361 VHDTANENST ITGEINYMKN NYNSAFVHAF VDGNRIIETA PTDYLSWGAG PNANDRFINV 420
  421 EIVHTHDYDS FARSMNNYAD YAATQLQYYG LKPNSAENDG SGTVWTHAAI SRWLGGTDHA 480
  481 DPHGYLQQHN YSYNELYDLI NEKYQIKMGQ VAPWGTTTTT KPSTGGSTTK PSTGGSTTKP 540
  541 STNDKLTVAA NSGMAQIKPT NNGLYTTVYD KKGHSTNQVQ KALSVTKTAT LGSNKFYLVQ 600
  601 DYNTGEKFGW VKQGDVVYNT AKSPVKVNQS YNVKPGTKAY TVPWGTDKQV AGTVSGKGNQ 660
  661 TFKATKQQQI DKAIYLYGSV NGVNGWISKS FLTTPSTSNT TKPTTPSKPA TNNQLTVAAN 720
  721 NGVAQIKTSN SGVYTTVYDK TGKSTDQVQK TLAVSKTATL GNDKFYLVQD YNTGKKYGWV 780
  781 KQSDVTYNTA KTPISVNQSY NVKPGTKVYT VPWGTFKQEA GTVSGKGNQT FKATKQQQID 840
  841 KATYLYGTVN GISGWISKYY LTEPTATRAA FAQPKMAIKS NVATNNEAAK AQSPTNVNTT 900
  901 QATKQIGQVK ANNAGIRSSV YDKTAKSGTK YADRTFTISK QRTEGDQTYV LLQNTASNTP 960
  961 LGWVNINDVD VQNLGNEAKL SGQYKVNNNN NGLYSIAWGT KNQQLLPASQ LANQTFNASK1020
 1021 AVYVGKEKYL YGTVNNRTGW IAAKDLEQAN SNNPATPYNY TFVIKNNHGY YYDEPSAKNG1080
 1081 YSLKTYFEKP FVVIKQKQQN GVTWYYGKLT NGKYVWIKES DLTKELVKYS NTGRTLNQMA1140
 1141 SIQNNLSFGP QVQRTPGVWS NATFGETKNA MDSNKLAKDP VSKYQFLRLD QPQYLSEATL1200
 1201 NKLLKGKGVL ENQGAAFSQA AKQYGLNEIY LISHALLETG NGQSQLAKGA NITNGVVNTR1260
 1261 STTKYHNVFG IAAFDYNALG EGVKFAKASG WNSVSKAIIG GAKFIGNSYV KAGQNTLYKM1320
 1321 RWNPENPGTH QYATDINWAE SNAQVLKGLY DQIGEVGKFF DIPKFKA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle