YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|59275987
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTQNPERGH VIEVSCDIAA QEKGTKVCGS APCGFSDANT MSKDAQERSA SMRKLCIAVV  60
   61 LCIIFMAVEV VGGIKANSLA ILTDAAHLLS DVAAFAISLF SLWAAGWEAN PRQSYGFFRI 120
  121 EILGALVSIQ MIWLLAGILV YEAIARLIHD TGEVQGFLMF VVSAFGLVVN LIMALLLGHD 180
  181 HGHGHGHSHG HDHGHEHGHN HDEHAHSHSD HEHGHGEHTH IHGISVSRHH HHNEGPSSRD 240
  241 QHSHAHDGDH TEPLLKNSCE GEGVPEGEEK KKQRNINVQG AYLHVLGDSI QSIGVMIGGA 300
  301 VIWYKPEWKI IDLICTLIFS VIVLGTTIRM LRSILEVLME STPREIDATR LEKGLCEMED 360
  361 VVAIHELHIW AITVGKVLLA CHVKIKPDAD ADTVLDKVID YIKREYNISH VTIQIERE

Type	Start	End	Confidence
Cytoplasmic	1	54	0.98
Transmembrane Helix	55	76	0.89
Non-Cytoplasmic	77	84	0.84
Transmembrane Helix	85	107	0.89
Cytoplasmic	108	116	0.91
Transmembrane Helix	117	141	0.81
Non-Cytoplasmic	142	155	0.82
Transmembrane Helix	156	178	0.92
Cytoplasmic	179	279	0.99
Transmembrane Helix	280	303	0.90
Non-Cytoplasmic	304	309	0.84
Transmembrane Helix	310	331	0.92
Cytoplasmic	332	418	0.97