YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62897823
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAARWRFWCV SVTMVVALLI VCDVPSASAQ RKKEMVLSEK VSQLMEWTNK RPVIRMNGDK  60
   61 FRRLVKAPPR NYSVIVMFTA LQLHRQCVVC KQADEEFQIL ANSWRYSSAF TNRIFFAMVD 120
  121 FDEGSDVFQM LNMNSAPTFI NFPAKGKPKR GDTYELQVRG FSAEQIARWI ADRTDVNIRV 180
  181 IRPPNYAGPL MLGLLLAVIG GLVYLRRSNM EFLFNKTGWA FAALCFVLAM TSGQMWNHIR 240
  241 GPPYAHKNPH TGHVNYIHGS SQAQFVAETH IVLLFNGGVT LGMVLLCEAV TSDMDIGKRK 300
  301 IMCVAGIGLV VLFFSWMLSI FRSKYHGYPY SFLMS

Type	Start	End	Confidence
Signal Peptide	1	29	0.99
N-region	1	20
H-region	21	26
C-region	27	29
Cleavage Site	29	30
Non-Cytoplasmic	30	185	0.99
Transmembrane Helix	186	205	0.97
Cytoplasmic	206	216	0.76
Transmembrane Helix	217	236	0.91
Non-Cytoplasmic	237	268	0.93
Transmembrane Helix	269	290	0.90
Cytoplasmic	291	300	0.88
Transmembrane Helix	301	321	0.94
Non-Cytoplasmic	322	335	0.94