YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62896801
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSSFNEWFW QDRFWLPPNV TWTELEDRDG RVYPHPQDLL AALPLALVLL AMRLAFERFI  60
   61 GLPLSRWLGV RDQTRRQVKP NATLEKHFLT EGHRPKEPQL SLLAAQCGLT LQQTQRWFRR 120
  121 RRNQDRPQLT KKFCEASWRF LFYLSSFVGG PSVLYHESWL WAPVMCWDRY PNQTLKPSLY 180
  181 WWYLLELGFY LSLLIRLPFD VKRKDFKEQV IHHFVAVILM TFSYSANLLR IGSLVLLLHD 240
  241 SSDYLLEACK MVNYMQYQQV CDALFLIFSF VFFYTRLVLF PTQILYTTYY ESISNRGPFF 300
  301 GYYFFNGLLM LLQLLHVFWS CLILRMLYSF MKKGQMEKDI RSDVEESDSS EEAAAAQEPL 360
  361 QLKNGTAGGP RPAPTDGPRS RVAGRLTNRH TTAT

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.71
Transmembrane Helix	39	56	0.75
Cytoplasmic	57	139	0.89
Transmembrane Helix	140	159	0.90
Non-Cytoplasmic	160	178	0.93
Transmembrane Helix	179	199	0.92
Cytoplasmic	200	209	0.93
Transmembrane Helix	210	231	0.68
Non-Cytoplasmic	232	260	0.65
Transmembrane Helix	261	280	0.70
Cytoplasmic	281	298	0.40
Transmembrane Helix	299	323	0.81
Non-Cytoplasmic	324	394	0.47