YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62089230
Protein type:	Transmembrane
Type Confidence:	0.97
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ASDALHSLSA PVLRLSSRSA ARPATMTEQA ISFAKDFLAG GIAAAISKTA VAPIERVKLL  60
   61 LQVQHASKQI AADKQYKGIV DCIVRIPKEQ GVLSFWRGNL ANVIRYFPTQ ALNFAFKDKY 120
  121 KQIFLGGVDK HTQFWRYFAG NLASGGAAGA TSLCFVYPLD FARTRLAADV GKSGTEREFR 180
  181 GLGDCLVKIT KSDGIRGLYQ GFSVSVQGII IYRAAYFGVY DTAKGMLPDP KNTHIVVSWM 240
  241 IAQTVTAVAG VVSYPFDTVR RRMMMQSGRK GADIMYTGTV DCWRKIFRDE GGKAFFKGAW 300
  301 SNVLRGMGGA FVLVLYDELK KVI

Type	Start	End	Confidence
Cytoplasmic	1	196	0.62
Transmembrane Helix	197	216	0.67
Non-Cytoplasmic	217	234	0.89
Transmembrane Helix	235	256	0.89
Cytoplasmic	257	323	0.82