YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|62088608
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	210	0.99
Transmembrane Helix	211	233	0.92
Non-Cytoplasmic	234	258	0.90
Transmembrane Helix	259	278	0.92
Cytoplasmic	279	296	0.90
Transmembrane Helix	297	318	0.91
Non-Cytoplasmic	319	325	0.82
Transmembrane Helix	326	347	0.92
Cytoplasmic	348	387	0.97
Transmembrane Helix	388	407	0.70
Non-Cytoplasmic	408	414	0.57
Transmembrane Helix	415	437	0.72
Cytoplasmic	438	451	0.74
Transmembrane Helix	452	471	0.88
Non-Cytoplasmic	472	482	0.75
Transmembrane Helix	483	505	0.85
Cytoplasmic	506	523	0.85
Transmembrane Helix	524	544	0.63
Non-Cytoplasmic	545	554	0.66
Transmembrane Helix	555	577	0.80
Cytoplasmic	578	616	0.79

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KMPSRKFADG EVVRGRWPGS SLYYEVEILS HDSTSQLYTV KYKDGTELEL KENDIKPLTS  60
   61 FRQRKGGSTS SSPSRRRGSR SRSRSRSPGR PPKSARRSAS ASHQADIKEA RREVEVKLTP 120
  121 LILKPFGNSI SRYNGEPEHI ERNDAPHKNT QEKFNLSQES SYIATQYSLR PRREEVKLKE 180
  181 IDSKEEKYVA KELAVRTFEV TPIRAKDLEF GGVPGVFLIM FGLPVFLFLL LLMCKQKDPS 240
  241 LLNFPPPLPA LYELWETRVF GVYLLWFLIQ VLFYLLPIGK VVEGTPLIDG RRLKYRLNGF 300
  301 YAFILTSAVI GTSLFQGVEF HYVYSHFLQF ALAATVFCVV LSVYLYMRSL KAPRNDLSPA 360
  361 SSGNAVYDFF IGRELNPRIG TFDLKYFCEL RPGLIGWVVI NLVMLLAEMK IQDRAVPSLA 420
  421 MILVNSFQLL YVVDALWNEE ALLTTMDIIH DGFGFMLAFG DLVWVPFIYS FQAFYLVSHP 480
  481 NEVSWPMASL IIVLKLCGYV IFRGANSQKN AFRKNPSDPK LAHLKTIHTS TGKNLLVSGW 540
  541 WGFVRHPNYL GDLIMALAWS LPCGFNHILP YFYIIYFTML LVHREARDEY HCKKKYGVAW 600
  601 EKYCQRVPYR IFPYIY