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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|62006019
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MREKRETFGF RKSKISKTLC GALLGTAILA SVAGQKVLAE ETSTTSNVDT AVVGMETGNP  60
   61 ATNLPEKQDN PSSQATTSQE QAGQKTGSMS VDVPTSELDE AAKSAKEAGV TVSQDETVDK 120
  121 GTVESSDEAS QKESEIKDDY SKQAADIQKT TEDYKAAVAA NQAETDRITQ ENAAKKAQYE 180
  181 QDLAANKAEV ERITNENAQA KADYEAKLAQ YQKDLAAVQQ ANNDSQAAYA AAKEAYDKEL 240
  241 ARVQAANAAA KKEYEEALAA NTAKNEQIKA ENAAIQQRNA QAKADYEAKL AQYKKDLAAA 300
  301 QSGNATNEAD YQAKKAAYEQ ELARVQAANA AAKQAYEQAL AANTAKNAQI TAENKAIQQR 360
  361 NAQAKADYEA KLAQYQKDLA AAQSGNAANE ADYQEKLAAY EKELARVQAA NAAAKQEYEQ 420
  421 KVQEANAKNA EITEANRAIR ERNAKAKTDY ELKLSKYQEE LAQYKKDLAE YPAKLQAYQD 480
  481 EQAAIKAALE ELEKHKNEDG NLSEPSAQSL VYDLEPNAQI SLVTDGKLLK ASALDEAFSH 540
  541 DTEQYNKHNL QPDNLNITYL EQADDVASSV ELFGNFGDKA GWTTTVSNGS EVKFASVLLK 600
  601 RGQSATATYT NLKNSYYNGK KISKVVYKYT VDPDSKFQNP TGNVWLGIFT DPTLGVFASA 660
  661 YTGQNEKDTS IFIKNEFTFY DEDGNPIDFD NALLSVASLN REHNSIEMAK DYSGTFVKIS 720
  721 GSSIGEKNGM IYATDTLNFK KGEGGSLHTM YTRASEPGSG WDSADAPNSW YGAGAVRMSG 780
  781 PNNYITLGAT SATNVLSLAE MPQVPGKDNT AGKKPNIWYS LNGKIRAVNV PKVTKEKPTP 840
  841 PVEPTKPDEP VYEVEKELVD LPVEPSYEKE PTPPSKTPDQ NIPDKPVEPT YEVEKELEPA 900
  901 PVEPSYEKEP TPPTKTPDQS IPEKPVEPTY EVEKELEPAP VEPSYEKEPT PPQSTPDQEE 960
  961 PKKPVEPSYQ SLPTPPVEPV YETVPGPVSV PTVRYHYYKL AVQPGVTKEI KNQDDLDIDK1020
 1021 TLVAKQSTVK FQLKTADLPA GRPETTSFVL MDPLPSGYQL NLEATKVASP GFEASYDAMT1080
 1081 HTVTFTATAQ TLAALNQDLT KAVATIYPTV VGQVLNDGAT YTNNFTLLVN DAYGIKSNIV1140
 1141 RVTTPGKPND PDNPSNNYIT PHKVNKNENG VVIDGKSVLA GTTNYYELTW DLDQYKGDKS1200
 1201 AKETIQKGFF YVDDYPEEAL DLRTDLIKLT DANGKAVTGV SVADYASLEA APAAVQDMLK1260
 1261 KANITPKGAF QVFTADDPQA FYDAYVVTGT DLTIVTPMTV KAEMGKIGGS YENKAYQIDF1320
 1321 GNGYESNIVI NNVPQINPEK DVTLTMDPAD STNVDGQTIA LNQVFNYRLI GGIIPADHAE1380
 1381 ELFEYSFNDD YDQTGDQYTG QYKAFAKVDL TLKDGTIIKA GTDLTSYTEA QVDEANGQIV1440
 1441 VTFKEDFLRS VSVDSAFQAE VYLQMKRIAV GTFANTYVNT VNGITYSSNT VRTSTPEPKQ1500
 1501 PSPVDPKTTT TVVFQPRQGK AYQPAPPAGA QLPATGDSSN AYLPLLGLVS LTAGFSLLGL1560
 1561 RRKQD

YRC Informatics Platform - Version 3.0
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