YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|61651614
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	105	0.97
Transmembrane Helix	106	128	0.85
Non-Cytoplasmic	129	148	0.88
Transmembrane Helix	149	167	0.92
Cytoplasmic	168	176	0.84
Transmembrane Helix	177	198	0.93
Non-Cytoplasmic	199	212	0.71
Transmembrane Helix	213	228	0.46
Cytoplasmic	229	232	0.35
Transmembrane Helix	233	256	0.87
Non-Cytoplasmic	257	267	0.44
Transmembrane Helix	268	289	0.87
Cytoplasmic	290	305	0.49
Transmembrane Helix	306	329	0.88
Non-Cytoplasmic	330	365	0.50
Transmembrane Helix	366	384	0.53
Cytoplasmic	385	399	0.41
Transmembrane Helix	400	424	0.80
Non-Cytoplasmic	425	428	0.37
Transmembrane Helix	429	453	0.86
Cytoplasmic	454	459	0.32
Transmembrane Helix	460	482	0.78
Non-Cytoplasmic	483	539	0.46
Transmembrane Helix	540	562	0.83
Cytoplasmic	563	622	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAVLQTKGL LSLPSNPKLR VLRSPQSSLR QRVTNPQALK PKPLQGFSLS SNGFQKFHGV  60
   61 ACNTQGFGQK LRNLPICRAE AAAAAADGQP LYGEVQSPKF LGIELVTLKK IIPLGLMFFC 120
  121 ILFNYTILRD TKDVLVVTAK GSSAEIIPFL KTWVNLPMAI GFMVLYTKLS DILPRKTLFY 180
  181 TVMLPFIAFF GAFGFVLYPM SNYFHPTALA DQLLATLGPR FLGPLAILRI WSFCLFYVMA 240
  241 ELWGSVVVSV LFWGFANQIT TIEEAKRFYP LFGLGANVAL IFSGRTVKYF SKLRANLGPG 300
  301 VDGWAVSLKG MMSIVVLMGL AICFFYWWVN TYVPLPTRSK KKKEKVKMGT MESLKFLVSQ 360
  361 KYIRDLATLV VAYGISINLV EVTWKSKLKA QFPSPNEYSA FMGDFSTATG IATFSMMLLS 420
  421 QFIFDKFGWG VAAAITPTVL LLSGVGFFSL ILFGGPLGPT LSSFGITPLL AAVYVGAMQN 480
  481 IFSKSAKYSL FDPCKEMAYI PLDEDTKVKG KAAIDVVCNP LGKSGGALIQ QFMILTFGSL 540
  541 ANSTPYLGGI LLLIVTAWLA AARSLDKQFT ELRREEDLEK EMERASVKIP VVADNSTGNG 600
  601 PLTGGSQLND SPNSSSESLK SQ