YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|194033238, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNFDYNHVVI MGLNQRDSIW KLLNDYNVNS LKRRRQAEID AFFEPFERAQ RIRFNNWQNG  60
   61 IELLDGAEWR NGDIVIPGGG GPVISSPLDQ FFIDPLFGLD MGNFYLSFTN ESLFMAVTVV 120
  121 LVLSLFGVVT KKGGGKLVPN AWQSLVELIY DFVLNLVNEQ IGGNVKQKFF PCILVTFTFS 180
  181 LFCNLQGMIP FSFTVTSHFL ITLALSFSIF IGITIVGFQR HGLHFFSFLL PAGVPLPLAP 240
  241 FLVLLELISY CFRALSLGIR LFANMMAGHS LVKILSGFAW TMLFLNNIFY FIGDLGPLFI 300
  301 VLALTGLELG VAILQAYVFT ILICIYLNDA INLH

Type	Start	End	Confidence
Cytoplasmic	1	107	0.68
Transmembrane Helix	108	130	0.79
Non-Cytoplasmic	131	168	0.38
Transmembrane Helix	169	189	0.71
Cytoplasmic	190	196	0.50
Transmembrane Helix	197	218	0.91
Non-Cytoplasmic	219	227	0.53
Transmembrane Helix	228	252	0.78
Cytoplasmic	253	268	0.51
Transmembrane Helix	269	292	0.77
Non-Cytoplasmic	293	298	0.55
Transmembrane Helix	299	327	0.76
Cytoplasmic	328	334	0.66