YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|215768238, gi...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTKSFLPP PFIALSSNPR PTTLAPTPNP RPRRRNSLAI CSASASGDPS PTPEAEGGGN  60
   61 PLLALWRRTL HPLGDYGFGK RSVWEGGVGL FMVSGAALLA LALAWLRGFQ LRARFRKYQA 120
  121 VFEFTQACGI CVGTPVRIRG VTVGNVVRVD SSLKSIDAYV EVEDDKIIVP RNSVVEVNQS 180
  181 GLLMETLIDI TPKDPLPTPS VGPLDPDCSK EGLILCDKER MKGQQGVSLD ALVGIFTRLG 240
  241 RDMEEIGVHK SYKLAEKVAS IMEEAQPLLS RIEALAEEIQ PLLSEVRDSD LVKDVEIIAK 300
  301 GLADASGDLR RLKSSMLTPE NTDLIKQSIF TLIFTLKNIE SISSDISGFT GDDATRRNIK 360
  361 LLIKSLSRLL

Type	Start	End	Confidence
Cytoplasmic	1	85	0.71
Transmembrane Helix	86	106	0.92
Non-Cytoplasmic	107	370	0.74