YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|218189681
Protein type:	Transmembrane
Type Confidence:	0.77
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGSEEEPSQM RRALVDALAG AISGGISRTV TSPLDVIKIR FQVQLEPTTS WGVLRRDVYG  60
   61 PSKYTGLLQA SKDILREEGL PGFWRGNVPA LLMYMPYTAI QFTVLHKLKT FASGSSKTED 120
  121 HLHLSPYLSY VSGAIAGCAA TVGSYPFDLL RTILASQGEP KVYPDMRSAF LDIMKTRGFR 180
  181 GLYAGLTPTL VEIIPYAGLQ FGSYDTFKRS MMTWNRYRYS HLNSGSEDDS VSSFQLFLCG 240
  241 FAAGTFSKAA CHPLDVVKKR FQIEGLKRHP RYGARIESST YKGMYHALKE IVAKEGFGGL 300
  301 YKGLFPSLVK SAPAGAVTFV AYEYISDWIG SKAGVE

Type	Start	End	Confidence
Cytoplasmic	1	85	0.50
Transmembrane Helix	86	105	0.40
Non-Cytoplasmic	106	336	0.56