YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|215695332, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVSRRKKWV AWVAAVTIFV VLMLVTPAIP QNEEYHDFAD QRRLFLGIPN TLNVISNIPF  60
   61 FFVGVVGLVL CHYKNYFRLN SQGELWSWTL FFAGVTAVAF GSSYYHLKPN DATLVWDRLP 120
  121 MTIAFTSVMA IFIIERVDDR AGTKSLAPLV IAGALSIMYW RFFDDLRPYA VIQFVPCIAI 180
  181 PVMAIVIPPM YTHSSYWLWA AGFYLLAKVE EAADKPIYKW THQIVSGHTL KHLAAAMVPV 240
  241 FLALMLAKRT VEPERVSLFQ RWKVKLVAVR ETRFNKDRNT VDYNYIAVST TPEP

Type	Start	End	Confidence
Cytoplasmic	1	8	0.96
Transmembrane Helix	9	29	0.96
Non-Cytoplasmic	30	53	0.91
Transmembrane Helix	54	73	0.91
Cytoplasmic	74	84	0.82
Transmembrane Helix	85	107	0.91
Non-Cytoplasmic	108	113	0.91
Transmembrane Helix	114	134	0.78
Cytoplasmic	135	144	0.64
Transmembrane Helix	145	163	0.78
Non-Cytoplasmic	164	169	0.58
Transmembrane Helix	170	192	0.87
Cytoplasmic	193	294	0.54