YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115439705, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSLLPPLA PVSPPPRLLL PSSRSALLPR GPRVAPRVPV SPPRALPDTA VGAAEALRGA  60
   61 LADAFLASPP TWRSAAVSNL AIFVAGSPVL LSGLSASGFA AAYLLGTLTW RAFGPKGLVL 120
  121 VASYFVLGTA ATKLKIKQKE ALGVAEKRGG RRGTGSVIGS SAAGCVCALL SIYNVGSAAL 180
  181 AELWRLGFVA SYCTKLSDTV SSEIGKAYGR TTYLVTTLKV VPRGTEGAIS IEGTLAGILA 240
  241 SIILASVGYL LGQVNVSQGA VCVLASQIAN FCESYIGATL QDKEGFEWLT NDVVNVLNIS 300
  301 TGGILAVLMQ QLLVSWRS

Type	Start	End	Confidence
Cytoplasmic	1	79	0.97
Transmembrane Helix	80	104	0.88
Non-Cytoplasmic	105	111	0.85
Transmembrane Helix	112	134	0.85
Cytoplasmic	135	154	0.89
Transmembrane Helix	155	176	0.88
Non-Cytoplasmic	177	230	0.82
Transmembrane Helix	231	252	0.84
Cytoplasmic	253	259	0.63
Transmembrane Helix	260	278	0.46
Non-Cytoplasmic	279	292	0.56
Transmembrane Helix	293	314	0.73
Cytoplasmic	315	318	0.64