YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	P5CR3_DANRE
Protein type:	Transmembrane
Type Confidence:	0.74
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLSGASDKT SDSPDVFQIK IGFIGAGNMA FGVAQGIIAS GKVPPSNIII SAPSMNNLPR  60
   61 FKEKGVSVTH SNHEVVGGSR LIFLAVKPHI IPQVLKEISQ EVTKEHIIVS MAAGITIATL 120
  121 EELLPAGTHV IRIMPNLPCM LLEGALLLSC GSHAGEQEET LLKTLLGPCG LVEFGPESWI 180
  181 DAHVGLSGSG VAFVYVFAEA LADGAVKMGM PSTLARRIAA QTILGAGVLL RDSGKLPAEL 240
  241 KAEVCTPGGT TIHGIHALEK GGFRAAAIGA VEAASERARE LGNKQKKN

Type	Start	End	Confidence
Cytoplasmic	1	20	0.53
Transmembrane Helix	21	39	0.60
Non-Cytoplasmic	40	288	0.74