YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207254, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	74	0.72
Transmembrane Helix	75	95	0.93
Cytoplasmic	96	107	0.82
Transmembrane Helix	108	131	0.92
Non-Cytoplasmic	132	136	0.83
Transmembrane Helix	137	159	0.89
Cytoplasmic	160	168	0.72
Transmembrane Helix	169	191	0.90
Non-Cytoplasmic	192	202	0.83
Transmembrane Helix	203	225	0.91
Cytoplasmic	226	238	0.77
Transmembrane Helix	239	259	0.90
Non-Cytoplasmic	260	268	0.69
Transmembrane Helix	269	293	0.81
Cytoplasmic	294	302	0.81
Transmembrane Helix	303	323	0.71
Non-Cytoplasmic	324	333	0.66
Transmembrane Helix	334	353	0.92
Cytoplasmic	354	417	0.93

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METYSTYRRL LSFTEGLDSF PESPLMAELR ATQEPLSLVP RSDVAPAGLL AAQFSSSEAP  60
   61 THRIVAFWDS PLSHWINVFV GIVLCFTMLG LGCTVELSQL GEHIRKPIGV LLAAVCQFVL 120
  121 MPLIAFLLAL AFSLNDVAAM AVLLCGCCPG GNLSNIMTLL VNGDMNLSII MTISSTLLAL 180
  181 VLMPLCLWMY SRAWINTPVV DLLPFGPIIL TLCSTLIPIG LGVWLRQRYI HVAEVIIKVS 240
  241 LWSLLVTLLM LFIMTGTMLG PELLATIPAS VYLVAVLMPM AGYTAGYGLA TLFDLPPNSR 300
  301 RTVSLETGCQ NIQLCTAILK LAFPPQLMGG MYMFPLLYAL FQAAEAGIFI LVYRMYRKEV 360
  361 LHKQDLMEDD DDDTNVSYKR MKEEDVPFDS TYGAVIVSDP NVIVLESQDG AGSPTPV