YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|118344558, gi...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.96
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLLILCVFA ALALTNDALV RIPLKKFRSI RRELTDSGRK IEELLADRRI NKYNYGFPTA  60
   61 GAPTPETLKN YLDAQYYGEI GLGTPPQPFT VVFDTGSSNL WVPSVHCSLL DIACLLHHKY 120
  121 NSAKSSSYVK NGTAFAIRYG SGSLSGYLSQ DTCTLGDLAV EKQLFGEAIK QPGIAFIAAK 180
  181 FDGILGMAYP RISVDGVTPV FDNIMSQKKV EKNVFSFYLN RNPDTQPGGE LLLGGTDPKY 240
  241 YTGDFDYVNV TRQAYWQIHM DGMSVGSQLS LCKSGCEAIV DTGTSLLTGP SEEVKALQKA 300
  301 IGAMPLIQGE YMVSCDKIPS LPVITFNIGG KPFSLSGDQY VLKVSQAGKT ICLSGFMALD 360
  361 IPAPAGPLWI LGDVFIGQYY TVFDRDNNRV GFAKAK

Type	Start	End	Confidence
Signal Peptide	1	18	0.96
N-region	1	9
H-region	10	15
C-region	16	18
Cleavage Site	18	19
Non-Cytoplasmic	19	396	0.99