YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|76152074, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	7	0.96
Transmembrane Helix	8	28	0.85
Non-Cytoplasmic	29	63	0.91
Transmembrane Helix	64	87	0.90
Cytoplasmic	88	95	0.86
Transmembrane Helix	96	116	0.92
Non-Cytoplasmic	117	122	0.88
Transmembrane Helix	123	145	0.92
Cytoplasmic	146	155	0.85
Transmembrane Helix	156	176	0.93
Non-Cytoplasmic	177	184	0.86
Transmembrane Helix	185	207	0.90
Cytoplasmic	208	271	0.97
Transmembrane Helix	272	292	0.89
Non-Cytoplasmic	293	306	0.85
Transmembrane Helix	307	328	0.93
Cytoplasmic	329	335	0.93
Transmembrane Helix	336	358	0.92
Non-Cytoplasmic	359	366	0.81
Transmembrane Helix	367	391	0.87
Cytoplasmic	392	401	0.89
Transmembrane Helix	402	422	0.92
Non-Cytoplasmic	423	429	0.75
Transmembrane Helix	430	450	0.93
Cytoplasmic	451	488	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESNKKEVTP QLMMAVGTAV IGSLQFGYNT GVINAPQKII EGFYNETWHN RYSEYIPPTT  60
   61 LTTLWSVSVA IFSVGGILGS FSVGLFVNRF GRRNSMLIAN ILAFIAAAFM GFSKLAESWE 120
  121 MLIIGRFIVG LYSGLSTGFV PMYVGEIAPT SLRGALGTLH QLGIVIGILM AQIFGIKEIM 180
  181 GSPTLWPFML GFTFIPAVLQ CALLPFCPES PRYLLINQNE EAKAKSVLKK LRGTDDVGAD 240
  241 MQEMRDESRQ MMREKTVTIP ELFRSSLYRQ PIFIAIMLQL SQQFSGINAV FYYSTGIFEK 300
  301 AGVSEPVYAT IGAGAVNTAF TVVSLFIVER VGRRSLHLVG LMGMAVSSVL MTIAMALLTK 360
  361 VEWMSYVSIV AIFSFVAFFE IGPGPIPWFI VAELFSQGPR PSAFAVAGFS NWFANFLVGM 420
  421 CFQYVEELTG PYVFIIFTVL LLIFFVFTYF KVPETKGRSF EEITASFRTG ADKYNRDDLN 480
  481 TLGADSQL