YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207944, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWEFPRTRYA DCNGSEASEE TEISVNIGGV KHTLYGDVLN RYPETRLAEL LNRVSDSAED  60
   61 LSGLCDDYDD LKREFYFDRD PKAFKCILEL YYYGEIHMKR GICPMCFMKE MDYWGIDEDY 120
  121 LDECCRCSLN EVETELAEIA EKVKTILDDL EDDDDDDDAR VSRSQRCQTF LWKLMEKPES 180
  181 SVAARVIAVV SFVFILLSSV VMCVGTIPEL QVQDDEGHLT EHPTLEAIET ACIIWFTVEY 240
  241 VLRLASSSSK LHFVFSFLNI IDFLAIMPFY VVLILTHLGT AMMELANVQQ AVQALRIMRI 300
  301 ARIFKLARHS SGLQTLTFAL KSSLKELGLL LMYMSVGIFL FSALGYTMEQ SHPETMFTSI 360
  361 PQSFWWAIIT MTTVGYGDIY PKTTLGRCNA AVSFLCGVIA IALPIHPIIN NFVIVYSKQR 420
  421 VLETAAKHEI ELMALRAREE AQECPEAERR AASVDSSSMW DSAAVSASQS DSFIPLLGET 480
  481 ATVSKNQRAQ KCNN

Type	Start	End	Confidence
Cytoplasmic	1	181	0.97
Transmembrane Helix	182	205	0.88
Non-Cytoplasmic	206	252	0.69
Transmembrane Helix	253	279	0.78
Cytoplasmic	280	326	0.68
Transmembrane Helix	327	348	0.90
Non-Cytoplasmic	349	361	0.71
Transmembrane Helix	362	380	0.88
Cytoplasmic	381	387	0.71
Transmembrane Helix	388	409	0.88
Non-Cytoplasmic	410	494	0.82