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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|68394786, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.66
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNSAKKSCLV LIVALAVTLE VTAGEVPSDD GVGEGGDSQS TAENEGANIV TGRAYVPKDA  60
   61 QTDSSTTDTD MEIKVDEIEK EDLPSQPPPP QERSKEVPVV NGGTASGEPC IFPFLFQGKE 120
  121 YSDCTTEGRG DGRLWCATTY DYNNDKRWGF CETEEQAEQR RMAEEAEEQY QATVRMINGT 180
  181 NRRSQKKELF DKLLQVAEMG HTKAMEKVAY AMLFGDYLPQ SIPQAKEMFE KLALEGSPKA 240
  241 QTALGFLYAA GLGVNSSQAK ALVYYTFGAL GGNLVAHMIL GYRYWGGVGV PQSCESALTH 300
  301 YRLVANHVAS DVSLTGGSAV QRIRLLDEVE NPGSSSGMLE EDLIQYYQFL AEKGDVQAQV 360
  361 GLGQLHLHGG RGVEQNHQRA YEYFNQAANA GNTHAMAFLG KMYSEGSEYV PQNNETALHY 420
  421 FKKAADLGNP VGQSGLGMAY LYGRGVPVNY DLALKYFQKA AEQGWVDGQL QLGTMYYNGI 480
  481 GVKRDYKQAL KFFNLASQAG HILAFYNLAQ MHATGTGVMR SCHTAVELFK NVCERGRWSE 540
  541 RLMAAYRSFK EGDMDSALIQ YLLLAEQGYE VAQSNVAFVL DQKGSQIFNE NETYPRALLH 600
  601 WTRAAAQGYT VARIKLGDYH FYGYGTDVDY ETAVIHYRLA SEQQHSAQAM FNLGYMHEKG 660
  661 LGIKQDIHLA KRFYDMAAEA SPDAQVPVFL ALCKLGLVYA LQYLQDLNLK EVLSQVDLDQ 720
  721 LLGPEWDLYL MTVIALLLGT VIAYRQRQHQ AVPRAPAAPN RPPAQPEQPA EEPEEQ

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle