YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PORED_DANRE
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.44
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFHILSIVNI IWLLLALCFG AAFCLNKFSV KLPNRVEHVF QDFIRYGKTK ENIKRASWQL  60
   61 VFDLSKRYFY HFYVVSVMWN GLLLLFSIRS VVMSEAFPDW IIDVLGSLTG RSRGAWNEIH 120
  121 LSTLLLQVLL WVHTLRRLLE CLFVSVFSDG VINVVQYAFG LSYYIILGLT VLCTNDSLPQ 180
  181 SESVSFFNQL TWYHVVGTLL FFWASFLQHQ SLSLLAKMRT DSSGKVETLA HKMPCGGWFE 240
  241 LVSCPHYLAE LLIYAAMCVC CGCASLTWWM VVLYVLCNQA LAAQLCHEYY RSKFKTYPHH 300
  301 RKAFIPFVL

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.64
Transmembrane Helix	7	28	0.83
Cytoplasmic	29	68	0.70
Transmembrane Helix	69	92	0.86
Non-Cytoplasmic	93	115	0.66
Transmembrane Helix	116	135	0.71
Cytoplasmic	136	145	0.50
Transmembrane Helix	146	173	0.67
Non-Cytoplasmic	174	189	0.62
Transmembrane Helix	190	209	0.91
Cytoplasmic	210	250	0.53
Transmembrane Helix	251	272	0.88
Non-Cytoplasmic	273	309	0.44