YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68366642, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCFIINIAVY FLLLPPHALS LWACTRSCPP TCTCTQEKSC SVLCDHVNMM DLPKEFPCEA  60
   61 SSINLDKNSL KFLSERAFGT LPSLKTLSLK YNNISFITPG AFKGLPNLVE LKMAHNEYIR 120
  121 YLHTRTFTAL KRLVRLDLSD CNLFNMPDRI FLEQITLKEL LCFQNNFRRV PGALRGMENL 180
  181 THVYLERNKI EAVAYNSLLG LTSLKYLNLQ ENRINVIHDE AFKDLIRLEN FYLNDNLLVD 240
  241 LPQQAFKGLS NLKMLNLGGN LLTNVSKTWF SDLVELEVLY LDRNRLSYIE DGSFENLTSL 300
  301 ITLHLNSNNL TSLPFSVFQP IYFIGRLYLF RNPWECTCDL EWLREWMESY KLVRDIPCAS 360
  361 PSSVAGLDLS EVVFAHLNST CLDPPELNMT TSLPDYPTVE NKFNSLISKL LQQELRDEMV 420
  421 NITDSLRNGT QQDPAESQVS SAHGLFGASQ TVFLLVVLFQ AQFDSINAS

Type	Start	End	Confidence
Signal Peptide	1	20	0.94
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	469	0.96