YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68359707, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSLYIAIEL VIAVLSIAGN VLVCWAVAIN STLKNATNYF LVSLAVADIL VGCLAIPFAI  60
   61 TISIGLWSDF YGCLFLACFV LVLTQSSIFS LLAVAIDRYL AVKIPLRYRE LVTGKRAREI 120
  121 ITILWILSFI IGLIPFVGWN RKDLACSRNK SGSLQTSNSS DDDAAETETG FLQSCYLECF 180
  181 FEKVVDMSYM VYFNFFGCVL PPLLIMLGIY AKIFTVARKQ LRQIELKCSV SNGENQHHGL 240
  241 LQREIRAAKS LSIIVGLFAL CWLPVHILNC LTLFYSELKK PSFIMNIAII LSHANSAVNP 300
  301 IIYAYRIREF RVTFRKILNR HILCQRDELY RSSNGSSSNR DQITMTIDPL L

Type	Start	End	Confidence
Non-Cytoplasmic	1	5	0.94
Transmembrane Helix	6	29	0.91
Cytoplasmic	30	38	0.88
Transmembrane Helix	39	62	0.90
Non-Cytoplasmic	63	72	0.75
Transmembrane Helix	73	96	0.91
Cytoplasmic	97	119	0.84
Transmembrane Helix	120	139	0.92
Non-Cytoplasmic	140	190	0.98
Transmembrane Helix	191	214	0.89
Cytoplasmic	215	250	0.95
Transmembrane Helix	251	275	0.83
Non-Cytoplasmic	276	282	0.92
Transmembrane Helix	283	305	0.87
Cytoplasmic	306	351	0.93