YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MR1BB_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPENIAFLTN STDLGHVGRA LGSSARPAWA IAVLASVLIF TTVVDVLGNL LVIISVFRNR  60
   61 KLRNAGNVFV VSLAFADLVV AFYPYPLVLY AIFHDGWSLG ETQCKISGFL MGLSVIGSVF 120
  121 NITGIAINRY CYICHSFAYG RLYSFRNTLL LVALIWALTV LAILPNFFVG SLSYDPRVYS 180
  181 CTFTQTASSS YTVVVVVVHF LVPIAVVTFC YLRIWVLVIQ VRRKVKSEER SRVRPSDLRN 240
  241 FVTMFVVFVL FAICWAPLNL IGLVVAINPE VMAPRVPEWL FVVSYFMAYF NSCLNAIIYG 300
  301 LLNRNFRKEY VRIMTAVWIP RRFVTETSRA ATDGMRSKPS PAINNNE

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.94
Transmembrane Helix	30	53	0.90
Cytoplasmic	54	64	0.85
Transmembrane Helix	65	87	0.89
Non-Cytoplasmic	88	105	0.89
Transmembrane Helix	106	128	0.88
Cytoplasmic	129	147	0.78
Transmembrane Helix	148	169	0.88
Non-Cytoplasmic	170	194	0.93
Transmembrane Helix	195	217	0.92
Cytoplasmic	218	239	0.91
Transmembrane Helix	240	261	0.93
Non-Cytoplasmic	262	280	0.85
Transmembrane Helix	281	302	0.92
Cytoplasmic	303	347	0.98