YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56207835, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTLQWTAVAT FLYVEIAVLI FFCLPFISAK RWQKIFKWSI WSRLSQFWNK GFLAMIIILI  60
   61 VLFLDALREV RKYSNSDQSK DAKLHPNMFD HMHMKLFRAQ RNLYISGFSL FLWLVMRRVV 120
  121 TLISQLATAA DSCVDLQNQV ETTNKAAKKY MEDNQILKQA LADAKEGGQK ADPEESKRLK 180
  181 EELQRLKEEL KTSADALKKS KSDLDTMKKQ SDGLTKEYER LLQEHQQLQN QMDSGDKKEN 240
  241

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.79
Transmembrane Helix	7	28	0.92
Cytoplasmic	29	46	0.80
Transmembrane Helix	47	67	0.93
Non-Cytoplasmic	68	101	0.78
Transmembrane Helix	102	116	0.64
Cytoplasmic	117	240	0.54