YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68356008, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDGRLETDLY PLGSSYVTEI DSVHDITVGT KRGSDELFSS CISNGPYIMS SGAANGNDSK  60
   61 KFKGDIRSPG IPSRVIHVRK LPNDINEAEV ISLGLPFGKV TNLLMLKGKN QAFLEMNTEE 120
  121 SAQTMVSYYS SVTPVIRNHP IFMQYSNHKE LKTDNSPNQV RAQAALQAVN AVQTGGMSLA 180
  181 AIDGAGMGSQ SPVLRVIVEN LFYPVTLDVL HQIFSKFGTV LKIITFTKNN QFQALVQYSD 240
  241 GMTAQHAKLS LDGQNIYNAC CTLRISFSKL TSLNVKYNND KSRDYTRPDL PTGDSQPSFD 300
  301 AQTMAAAALT APGIISASPY AGAHGFPQAF AIQQAAGLSL QGMPAGALAS LSVPGAAAAA 360
  361 AAAAAAGRLG LSGLTAAGNS VLLVSNLNPE SVTPQCLFIL FGVYGDVMRV KILFNKKENA 420
  421 LVQMSDGTQA QLAMSHLNGQ KLYGKALRAT LSKHTTVQLP REGHEDQGLT KDYSNSPLHR 480
  481 FKKPGSKNYS NIFPPSSTLH LSNIPPSVTE DDLRGLFLSS GAVVKAFKFF QKDRKMALIQ 540
  541 LASVEEAIES LIKFHNHDLG ENHHLRVSFS KSTI

Type	Start	End	Confidence
Non-Cytoplasmic	1	303	0.65
Transmembrane Helix	304	326	0.58
Cytoplasmic	327	342	0.40
Transmembrane Helix	343	366	0.66
Non-Cytoplasmic	367	390	0.58
Transmembrane Helix	391	408	0.31
Cytoplasmic	409	574	0.57