YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GTR12_DANRE
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.71
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	41	0.96
Transmembrane Helix	42	62	0.90
Non-Cytoplasmic	63	85	0.89
Transmembrane Helix	86	105	0.95
Cytoplasmic	106	113	0.78
Transmembrane Helix	114	137	0.91
Non-Cytoplasmic	138	142	0.76
Transmembrane Helix	143	162	0.92
Cytoplasmic	163	171	0.79
Transmembrane Helix	172	194	0.92
Non-Cytoplasmic	195	201	0.81
Transmembrane Helix	202	221	0.92
Cytoplasmic	222	286	0.94
Transmembrane Helix	287	306	0.71
Non-Cytoplasmic	307	322	0.72
Transmembrane Helix	323	345	0.78
Cytoplasmic	346	352	0.74
Transmembrane Helix	353	373	0.94
Non-Cytoplasmic	374	479	0.81
Transmembrane Helix	480	501	0.88
Cytoplasmic	502	511	0.65
Transmembrane Helix	512	534	0.86
Non-Cytoplasmic	535	542	0.64
Transmembrane Helix	543	562	0.96
Cytoplasmic	563	610	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDAPEESIRM TSDPQSKIYV QNPDTHIHLE QGPSAKSGNG RALVLCSVSV ACLSGLLMGY  60
   61 EMSLISGALL QLRDVLTLSC PEQEQVVGSL LLGAFLLSLG GGTILDHYGR RFTIILTALL 120
  121 CVLGTLLSVC VVSFWALVVG RMLVGMSVAL SGTASCLYAA EVAPAAWRGR CVCVYELMVV 180
  181 LGMLLGFGLS WAFAGVPDGW RFTFGGALLP ALLQAGVMPL LPDSPRFLLA QQREKEAHAT 240
  241 LLRLRAGIKE VEPVEDELRA IRLAMGAERL HGFLDLFQSR DNMLQRLLVG AALVFLQQAT 300
  301 GQPNILAYAS TVLSSVGFHG NEAATLASTG FGVVKVGGTI PAIFLVDKVG PKALLCVGVV 360
  361 VMMLSTATLG AITMQSRTHV SSLCRGPGNT ANFTLFETGD ETDIQTNTPL GLYQPQNKLK 420
  421 TNTFLTSIND TREHWILNHT YNHRTALMET AELSKKDSAK IALQSLHEVS PSLKWISLVS 480
  481 LLVYVAGFSI SLGPMVHVVL SAIFPTGIRG KAVSVISAFN WATNLLISMT FLTLTERIGL 540
  541 PTVIFSYSAM SFLLVVFVIV FVPETKGRSL EQISKELAMK NHLRGTLLCH RRKHKATAQP 600
  601 SQEEKALATV