YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60688517, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESEGSQSNL SSSDSPHDPC KMFIGGLSWQ TTQEGLKDYF CKFGEVKESM VMRDPVTKRS  60
   61 RGFGFVTFVD QAGVDKVLAQ TRHELDSKTI DPKVAFPRRA QPKLVTRTKK IFVGGLSVNT 120
  121 TIEDVKQYFD QFGKVDDAML MFDKTTNRHR GFGFVTFENE DVVEKVCEIH FHEINNKMVE 180
  181 CKKAQPKEVM SPTGSSRGRA RVMPYGMDAF MLGIGMLGYP GFQATTYAGR SYTSLTPGYT 240
  241 YQFPAIPLTA YNPMAAAAAA AAVVRGSTPS RSAGFLGTSS PGPMADLYGT ANQESAVSSY 300
  301 LSAASPAPST GFSHSLGGPL IATAFTNGYH

Type	Start	End	Confidence
Cytoplasmic	1	204	0.94
Transmembrane Helix	205	224	0.87
Non-Cytoplasmic	225	244	0.86
Transmembrane Helix	245	264	0.84
Cytoplasmic	265	330	0.78