YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|58013375
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAGGRMSIP PEGKKSKSDV IQRVPQSKPQ FSLGDIKKAI PPHCFQRSVL RSFSYVVYDL  60
   61 TIASLLCYVA STYIQFLPNP LSYFGWLLYW ICQGCVLTGV WVVAHECGHH AFSDYQWLDD 120
  121 TVGLILHSSL LVPYFSWKYS HRRHHSNTGS LERDEVFVPR VKSGIRWISK NLNNPPGRVL 180
  181 LLVFQLTLGW PLYLMFNVSG RHYDRFACHY NPHSPMYSDR ERAQILISDA GVLAVTCGLY 240
  241 RLTAAKGLAW VFCVYGGPLL VVNGFLVLIT YLQHTHPSLP HYDSSEWDWL RGALATVDRD 300
  301 WGILNKVFHN ITDTHVSHHL FSTMPHYHAM EATKAIKPIL GNYYQFDGTP IFKAMWREAK 360
  361 ECIYVERDEG DQNKGVFWYN NTL

Type	Start	End	Confidence
Cytoplasmic	1	54	0.86
Transmembrane Helix	55	77	0.84
Non-Cytoplasmic	78	85	0.64
Transmembrane Helix	86	105	0.88
Cytoplasmic	106	175	0.69
Transmembrane Helix	176	196	0.80
Non-Cytoplasmic	197	222	0.67
Transmembrane Helix	223	243	0.70
Cytoplasmic	244	250	0.60
Transmembrane Helix	251	272	0.92
Non-Cytoplasmic	273	383	0.77