YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|68051247
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	76	0.96
Transmembrane Helix	77	95	0.86
Non-Cytoplasmic	96	110	0.84
Transmembrane Helix	111	130	0.85
Cytoplasmic	131	153	0.83
Transmembrane Helix	154	179	0.80
Non-Cytoplasmic	180	185	0.87
Transmembrane Helix	186	206	0.93
Cytoplasmic	207	215	0.86
Transmembrane Helix	216	235	0.95
Non-Cytoplasmic	236	258	0.91
Transmembrane Helix	259	278	0.96
Cytoplasmic	279	298	0.91
Transmembrane Helix	299	323	0.90
Non-Cytoplasmic	324	380	0.90
Transmembrane Helix	381	403	0.77
Cytoplasmic	404	423	0.89
Transmembrane Helix	424	442	0.96
Non-Cytoplasmic	443	459	0.86
Transmembrane Helix	460	480	0.89
Cytoplasmic	481	489	0.70
Transmembrane Helix	490	509	0.95
Non-Cytoplasmic	510	518	0.82
Transmembrane Helix	519	540	0.93
Cytoplasmic	541	596	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSNEAYHEP GAGGDGPGGS SGASGGGSQR SNQLHHQQIL NETTYLKPAA KQAYFSDEKV  60
   61 LIPDDDSTNV GFSFRKLWAF TGPGFLMSIA YLDPGNIESD MQSGAAAKYK ILWVLLWATV 120
  121 LGLLMQRLAA RLGVVTGLHL AEMCYRQYKR LPRWILWIMI EIAIIGSDMQ EVIGTAIAIY 180
  181 LLSNKVVPLW GGVLITIVDT FTFLFLDKYG LRKLEFLFGT LITIMAVSFG YEYIVSAPNQ 240
  241 GEVLEGMFVP WCSNCNSNVL LQAVGVVGAV IMPHNLYLHS ALVKSRDIDR RQTKKVSEAN 300
  301 FYFFIEASVA LFVSFIINLF VVAVFAHGMY GKTNNDVVEV CKDKSMYEDA KMSFVDNVNG 360
  361 TAIIDADLYK GGLFLGCTFG AVAMYIWGVG ILAAGQSSTL TGTYAGQFSM EGFLNLQWPR 420
  421 WCRVLVTRCI AIIPTFCLAM FSKMEDLTSM NDILNAVMSL QLPFAAIPTI AFTSCAAIMG 480
  481 EFVNGLGNKI VSILLTIVVI GVNLYFVVVQ VENMEIKGGL LALVCIFAIL YILFNLYLVI 540
  541 HMAACMGNQR LMNSRWVQRF VLPSQNSFSI KNANSTYARI ATSSDQEPEG LAGEDA