YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|71895761, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.98
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNAEHLPP WAASAVPPNA STAWMEGPSA RGGRVGELAG MVVIQCIYAL VCLLGLLGNS  60
   61 LVIFVILRYT KMKTATNIYL LNLAIADELF MLSIPFVATS AALHHWPFGR ALCRTVLGVD 120
  121 GLNMFTSVFC LTVLSLDRYI AVVHPLRAAT YRRPRVAKMV NGAVWLLSLL VASPIPIFAG 180
  181 TAVTRDGQAV ACNLLWPSPA WSAAFVVYTT LLGFLLPVLA MGLCYLLIVG KMRAVAQRVG 240
  241 WQQRRRSEGK LTRLVLMVVA MFVVCWMPFY VVQLVNLLLP GRLDATVNNA CLILSYSNSC 300
  301 ANPILYGFLS ENFRHSFHGV LRRCLDASLC CCPPEARAVG DEEEEEEEEP LDYRAVPRSD 360
  361 PKGKGCMCPP LPCQQEPARP EPFCKPGTLL AKTTTF

Type	Start	End	Confidence
Non-Cytoplasmic	1	45	0.78
Transmembrane Helix	46	67	0.93
Cytoplasmic	68	77	0.87
Transmembrane Helix	78	103	0.80
Non-Cytoplasmic	104	120	0.81
Transmembrane Helix	121	142	0.85
Cytoplasmic	143	161	0.88
Transmembrane Helix	162	183	0.89
Non-Cytoplasmic	184	204	0.93
Transmembrane Helix	205	229	0.94
Cytoplasmic	230	250	0.94
Transmembrane Helix	251	272	0.94
Non-Cytoplasmic	273	396	0.73