YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|71043926, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAHPKEMVP LMGKRTTAPG GNPAVLTEKR PADLTPTKKS AHFFLEIEGF EPNPTVTKTS  60
   61 PPIFSKPMDS NIRQCLSGNC DDMDSPQSPQ DDVTETPSNP NSPSANLAKE EQRQKKKRLK 120
  121 KCIFAAVSEG CVRELRELLQ DLQELCRRRR GLDASDFLMH KLTASDTGKT CLMKALLNIN 180
  181 PNTKEIVRIL LAFAEENDIL DRFINAEYTE EAYEGQTALN IAIERRQGDI TAVLIAAGAD 240
  241 VNAHAKGVFF NPKYQHEGFY FGETPLALAA CTNQPEIVQL LMENEQTDIT SQDSRGNNIL 300
  301 HALVTVAEDF KTQNDFVKRM YDMILLRSGN WELETMRNND GLTPLQLAAK MGKAEILKYI 360
  361 LGREIKEKPL RSLSRKFTDW AYGPVSSSLY DLTNVDTTTD NSVLEIIVYN TNIDNRHEVL 420
  421 TLEPLHTLLH MKWKKFAKYM FFLSFCFYFS YNITLTLVSY YRPREGEALP HPLALTHKMS 480
  481 WLQLLGRMFV LIWAMCISVK EGIAIFLLRP SDLQSILSDA WFHFVIFGQA VLVILSVFLY 540
  541 LFAYKEYLAC LVLAMALGWA NMLYYTRGFQ SMGMYSVMIQ KVILHDVLKF LFVYILFLLG 600
  601 FGVALASLIE KCSKDKKDCS SYGSFSDAVL ELFKLTIGLG GLNIQQNSTY PILFLFLLIT 660
  661 YVILTFVLLL NMLIALMGET AENVSKESER IWRLQRARTT LEFEKMLPEW LRSRFRMGEL 720
  721 CKVADEDFRL CLRINEVKWT EWKTHVSFLN EDPGPIRRTA DSNKIQDSSR SNSKTTLYAF 780
  781 DELDEFPETS V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle