YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|77993354, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRLPVVFGLL VGCALIFAPV NEGCGPGRGH GKRRPPKKLT PLNYKQFSPN VAEKTLGASG  60
   61 RIEGKITRNS ERFKELTPNY NPDIIFKDEE NTGADRLMTQ RCKDKLNSLA ISVMNMWPGV 120
  121 KLRVTEGWDE DGNHFEDSLH YEGRAVDITT SDRDRNKYGM LARLAVEAGF DWVYYESKAH 180
  181 IHCSVKSEHS VAAKTGGCFP ASALVTVEDG SLKTLDSLQP GEKVLASSES DGSGTLVYSE 240
  241 VIAFLDRDPS ARKQFFTIET DSGAKLSLTA AHLLFVSEGN CSGSAANAEL RSVFASDVLP 300
  301 GQCVVSTQAA GQHGRLSRVS RIQMQEDRGV FAPLTSHGTV VVNGIVSSCY AAVDQHWLAH 360
  361 WAFGPLRVLY NWGGPVGHQV TGIHWYSSLL HWIGTQVLDP AHFHPWSMMD NDR

Type	Start	End	Confidence
Signal Peptide	1	23	0.95
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	413	0.97