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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: VGFR3_DANRE
Protein type: Transmembrane
Type Confidence: 0.93
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRDFTFFCR IWIGIPFFSG LVNGFSMSPP TLDNTKDQLV INANDTLNIT CRGQRILDWS  60
   61 WPEESLSKVE FTDRQGQQSP TDTPGYREIR LKECQGVAGK PYCKILILTN AQANDSGYYR 120
  121 CFYKDIKAVI DGTTAASIFV FVRDPEHPFI KRGDNDMETI FITDSETHIE VPCLVSDPDL 180
  181 KVTLFSLVPY PEPVDGSVVT WNNKKGWSIP RHIIQNTSTF IGFYCSISVQ NSQHTSSIYV 240
  241 VQVIGLKFYE FKLFPEDSPV ELMQGESLVL NCTALVDFNT GVDFQWDYPG KKENRLASLQ 300
  301 PLRNVLDEAT EISSILSIRN IHLDDSGYYT CWANTLEMKR ELTTVVIVHE KPFISLDYRN 360
  361 GSVIEAKEGQ KSVRLSVKVS AYPSPEIQWY KNGKLISSKN SSRFKVQQHS LQIRDVCKQD 420
  421 AGEYMLVLKN SPAALEKRLN FTLIVNVPPQ IHEKEAAPPT NLYGKGTRQI LTCTADGSPP 480
  481 ASISWQWRPW SPCDLERTRR ALRRRGGRDQ SPFCHNWMDL DPEHAVNPIE SIDTLTQMVD 540
  541 GKEKTVGRVV IQNASVPAMY KCLAENRVGK DERLIYFYVT TIPEGFDIEM EPSEDPLEQD 600
  601 LVQLKCNADN FTYENLRWYR LDPQTVPPEL DCKSLHQYAT FLEGQLSFQT TSNNWVLQLN 660
  661 ITNIQLQDEG NYVCEVQNRR TGVKHCHRKY IPVKAMEAPR YRHNPTNHTV NVSESLQMNC 720
  721 DVEGTPFPQL SWFKDNQPLH QISGILLQDS NRTLSIQRVR EEDAGLYTCS ACNQKGCVQS 780
  781 SATVSVIGSD DKTNVEIVIL IGTGVIAIFF WVLLLVIFCN VKRVNPADIK TGYLSIIMDP 840
  841 GEVPLEEQCE YLPYDSSQWE ISRDRLRLGK VLGHGAFGKV IEASIFGHDK KSSANTVAVK 900
  901 MLKEGATASE HKALMSELKI LIHIGNHLNV VNLLGACTKP NGPLMVIVEY CKYGNLSNFL 960
  961 RAKREFFLPY RDRSPKTQSQ VRRMIEAGQA SQSEHQPSTS STNPPRVTVD DLWKTPLTIE1020
 1021 DLICYSFQVA RGMEFLASRK CIHRDLAARN ILLSENNVVK ICDFGLARDI YKDPDYVRKG1080
 1081 NARLPLKWMA PESIFDKVYT SQSDVWSFGV LLWEIFSLGA SPYPGIQIDE DFCKRLKDGT1140
 1141 RMRAPDNASP EIYGIMLACW QGEPRERPTF PALVEILGDL LQENSLPEIP FNVSQSSEDD1200
 1201 GFSQASSRPP SQEEIRLACN TLPTRYYNCV PFAGCVMVGP SSTCHSRVKT FEELPMEMTS1260
 1261 HKTQHDSQTD SGMVLASDEL ERFEHKHRGA MLTTATTGQS TDRLISCPSV SSSGSGGGLL1320
 1321 RPVFFTQLSG QTFYNNEYGH LSEEGVSDYF SSSDQAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle