YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|125528310
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVAGGGE EGEELLLLSA VEAGSFGGGG DGGGAGAAAE KSWRLNFDGF RPPEVQQERR  60
   61 PPRGLHHHCL GVLSQGPEDV VAEYYQQQVE MLEGFNEMDT LTDRGFLPGM SKEEREKVAR 120
  121 SETLAIRLSN IANMVLFAAK VYASVRSGSL AIIASTLDSL LDLLSGFILW FTAFSMQTPN 180
  181 PYRYPIGKKR MQPLGILVFA SVMATLGLQI ILESVRSLLS DGDEFSLTKE QEKWVVDIML 240
  241 AVTLVKLALV LYCRTFTNEI VKAYAQDHFF DVITNMIGLV AALLATYIEG WIDPVGAIIL 300
  301 AIYTIRTWSM TVLENVHSLV GQSASPEYLQ KLTYLCWNHH KAVRHIDTVR AYTFGSHYFV 360
  361 EVDIVLPSSM PLQEAHDIGE ALQEKLERLP EIERAFVHLD YEFTHRPEHA LSHEK

Type	Start	End	Confidence
Cytoplasmic	1	123	0.94
Transmembrane Helix	124	143	0.84
Non-Cytoplasmic	144	150	0.74
Transmembrane Helix	151	174	0.87
Cytoplasmic	175	192	0.86
Transmembrane Helix	193	212	0.95
Non-Cytoplasmic	213	234	0.89
Transmembrane Helix	235	256	0.60
Cytoplasmic	257	267	0.57
Transmembrane Helix	268	288	0.66
Non-Cytoplasmic	289	294	0.51
Transmembrane Helix	295	310	0.57
Cytoplasmic	311	415	0.70