YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|56784423, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSRRFKPVE ECSSDGRSEQ TVAADFDGTL VRSRSAFPYY LLVALEAGSV LRAVVLLLSV  60
   61 PFVYVTYIFF SESLAISTLV YISVAGLKVR NIEMVARSVL PKFYAEDVHP ESWRVFNSFG 120
  121 KRYIITASPR IMVEHFAKTF LGADKVVGTE LEVGKNGKAT GFMVKPGVLV GDHKRQAVVK 180
  181 ELRDAVPDVG LGDRETDFDF MSICKEAYLV TSRKYSAVPK NQLLSPLILH DGRLVQRPTP 240
  241 LVALVTFLWM PFGFALALLR VYVNLPLPER IVFYTYKLMG IRLIVKGNPP PPPKKGHPGV 300
  301 LFVCNHRTVL DPVEVAVALR RKVSCVTYSI SKFSELISPI KAVALSRERE KDAENIRRLL 360
  361 EEGDLVICPE GTTCREPFLL RFSALFAELT DRIVPVAINT KESMFHGSTV RGFKLMDPYF 420
  421 FFMNPRPTYE ITFLNQLPKE LTCSGGKSPI EVANYIQKTL SGQLGFECTA ITRKEKYSIL 480
  481 AGTDGRVPSK NKEKEKN

Type	Start	End	Confidence
Cytoplasmic	1	36	0.96
Transmembrane Helix	37	58	0.87
Non-Cytoplasmic	59	65	0.63
Transmembrane Helix	66	87	0.86
Cytoplasmic	88	240	0.96
Transmembrane Helix	241	263	0.88
Non-Cytoplasmic	264	497	0.96