YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|115435846, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGIFSGAGAH RPSCPSAANC AKWAQTYLKY CLCSTRDGMA LTLGLLSVIS WGVAEVPQII  60
   61 TNYKHKSTEG LSLAFLMTWI VGDFFNLIGC FLEPETLPTQ FYMALLYTIT TVILTGQTVY 120
  121 YSHIYHRLKA KKARATSKPQ RHQRADASLR EKLLGPKVIG EIRNNSHLGA TVPIPTSSPI 180
  181 TVNTEIVRQR HGPSSLSEYY YTSARSLSSS PVPMSGTWSA NYHQTNSPPE IDDQKESLVS 240
  241 EFSPAQYAAS PLIKNSLSVV PWMSLLLGMS VLHFLVGTTH QEVPNGIVIP VGRRLLLLAD 300
  301 DHADSSVSNG SGSGIGSFLG WAMAVIYMGG RLPQIWLNMK RGNAEGLNPL MFTFALVGNV 360
  361 TYVGSILVKS MDWSKLKPNL PWLVDAGGCV LLDTFIILQF LYFHYRKRHV PDEPDSADKV 420
  421

Type	Start	End	Confidence
Cytoplasmic	1	70	0.74
Transmembrane Helix	71	92	0.86
Non-Cytoplasmic	93	102	0.81
Transmembrane Helix	103	124	0.92
Cytoplasmic	125	257	0.99
Transmembrane Helix	258	277	0.93
Non-Cytoplasmic	278	311	0.92
Transmembrane Helix	312	330	0.90
Cytoplasmic	331	346	0.81
Transmembrane Helix	347	368	0.89
Non-Cytoplasmic	369	381	0.86
Transmembrane Helix	382	403	0.92
Cytoplasmic	404	420	0.95